MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-504

Family name MIR-504 (all species)
Seed GACCCUG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-504-v1  Bta-Mir-504-v2  Cfa-Mir-504-v1  Cfa-Mir-504-v2  Cja-Mir-504-v1  Cja-Mir-504-v2  Cpo-Mir-504-v1  Cpo-Mir-504-v2  Dno-Mir-504-v1  Dno-Mir-504-v2  Eca-Mir-504-v1  Eca-Mir-504-v2  Ete-Mir-504-v1  Ete-Mir-504-v2  Hsa-Mir-504-v1  Hsa-Mir-504-v2  Mml-Mir-504-v1  Mml-Mir-504-v2  Mmr-Mir-504-v1  Mmr-Mir-504-v2  Mmu-Mir-504-v1  Mmu-Mir-504-v2  Ocu-Mir-504-v1  Ocu-Mir-504-v2  Pab-Mir-504-v1  Pab-Mir-504-v2  Rno-Mir-504-v1  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010116.1: 2513706-2513765 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUGAAGUGAUGAAUCUGCUGCUGUUGGGAGACCCUGGUCUGCACUCUUAUCUGUAUGCUUACUGAGGGGAGAGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCUGUGG
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Structure
        10        20          30        40        50         
AUGUGAAGUGAUGAAUCU   G-    -|           G     A    UA  UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
GGUGUCCACCAUCGGACA   GA    U^           G     A    GG  UCAUU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-504_5p (predicted)
mirBase accessionNone
Sequence 
0- AGACCCUGGUCUGCACUCUUAUC -23
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Star sequence

Laf-Mir-504_3p* (predicted)
mirBase accessionNone
Sequence 
37- GGGGAGAGCAGGGCAGGGUUUCC -60
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