MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-504
Paralogues Cpo-Mir-504-v2 
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_79: 3501375-3501433 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 scaffold_79: 3501375-3501433 [+] UCSC
Mir-504-v2 scaffold_79: 3501376-3501432 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGUGAAACGCUGACCCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUGUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACGGCAUG
Get precursor sequence
Structure
        10        20          30        40        50         
GAGUGAAACGCUGACCCA   G-    -            G     A    A-| UGUGU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
GUACGGCACCAUCGGACA   GA    U            G     C    GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-504-v1_5p
mirBase accessionMIMAT0047309
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
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Star sequence

Cpo-Mir-504-v1_3p*
mirBase accessionMIMAT0047310
Sequence 
37- GGGAGCGCAGGGCAGGGUUUCC -59
Get sequence