MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-504
Paralogues Ocu-Mir-504-v2 
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 1830935-1830993 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 chrUn0002: 1830935-1830993 [-] UCSC Ensembl
Mir-504-v2 chrUn0002: 1830936-1830992 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUGGAAUGUUGAAUUAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCAUAUUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCAUG
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Structure
        10        20          30        40        50         
GAGUGGAAUGUUGAAUUA   G-    -            G          A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGCACUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
GUACGCCACCAUCGGACA   GA    U            G          GA^ UUAUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-504-v1_5p (predicted)
mirBase accessionMIMAT0048501
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
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Star sequence

Ocu-Mir-504-v1_3p* (predicted)
mirBase accessionMIMAT0048502
Sequence 
37- GGGAGUGCAGGGCAGGGUUUCC -59
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