MirGeneDB ID | Bta-Mir-504-v1 |
---|---|
Family name | MIR-504 (all species) |
Seed | GACCCUG |
Species | Cow (Bos taurus) |
MiRBase ID | bta-mir-504 |
Paralogues | Bta-Mir-504-v2 |
Orthologues | Cfa-Mir-504-v1 Cja-Mir-504-v1 Cpo-Mir-504-v1 Dno-Mir-504-v1 Eca-Mir-504-v1 Ete-Mir-504-v1 Hsa-Mir-504-v1 Laf-Mir-504 Mml-Mir-504-v1 Mmr-Mir-504-v1 Mmu-Mir-504-v1 Ocu-Mir-504-v1 Pab-Mir-504-v1 Rno-Mir-504-v1 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 22089371-22089429 [-] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-504-v1) |
Mir-504-v1
NC_037357.1: 22089371-22089429 [-]
UCSC
Ensembl
Mir-504-v2 NC_037357.1: 22089372-22089428 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AAGUGGAACGUUGACGAGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUGUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCAACCACUGCAUGGet precursor sequence |
Structure | 10 20 30 40 50 AAGUGGAACGUUGACGAG G- - G A G-| UGUAU GCU CUGU UGGGAGACCCUG UCUGC CUCU UC G CGG GACA ACCCUUUGGGAC GGACG GAGG AG C GUACGUCACCAACGGACA GA U G C GA^ UCAUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Bta-Mir-504-v1_5p |
mirBase accession | MIMAT0009340 |
Sequence |
0- AGACCCUGGUCUGCACUCUGUCU -23
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-504 |
Star sequence | Bta-Mir-504-v1_3p* |
mirBase accession | None |
Sequence |
36- AGGGAGCGCAGGGCAGGGUUUCC -59
Get sequence
|