MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-504-v2 
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 130839879-130839937 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUCGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUAUUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCAUCGUAUG
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Structure
        10        20          30        40        50         
GAGUCGAAUGUUGAAUCA   G-    -            G     A    A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     U
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
GUAUGCUACCAUCAGACA   GA    U            G     C    GA^ UUAUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-504-v1_5p (predicted)
mirBase accessionNone
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
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Star sequence

Cja-Mir-504-v1_3p* (predicted)
mirBase accessionNone
Sequence 
37- GGGAGCGCAGGGCAGGGUUUCC -59
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