| MirGeneDB ID | Cja-Mir-504-v1 |
|---|---|
| Family name | MIR-504 (all species) |
| Seed | GACCCUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-504-v2 |
| Orthologues | Bta-Mir-504-v1 Cfa-Mir-504-v1 Cpo-Mir-504-v1 Dno-Mir-504-v1 Eca-Mir-504-v1 Ete-Mir-504-v1 Hsa-Mir-504-v1 Laf-Mir-504 Mml-Mir-504-v1 Mmr-Mir-504-v1 Mmu-Mir-504-v1 Ocu-Mir-504-v1 Pab-Mir-504-v1 Rno-Mir-504-v1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 130839879-130839937 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGUCGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUAUUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCAUCGUAUGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGUCGAAUGUUGAAUCA G- - G A A-| UGUAU GCU CUGU UGGGAGACCCUG UCUGC CUCU UC U CGG GACA ACCCUUUGGGAC GGACG GAGG AG C GUAUGCUACCAUCAGACA GA U G C GA^ UUAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-504-v1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
|
| Star sequence | Cja-Mir-504-v1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- GGGAGCGCAGGGCAGGGUUUCC -59
Get sequence
|
