| MirGeneDB ID | Pab-Mir-504-v1 |
|---|---|
| Family name | MIR-504 (all species) |
| Seed | GACCCUG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-504-v2 |
| Orthologues | Bta-Mir-504-v1 Cfa-Mir-504-v1 Cja-Mir-504-v1 Cpo-Mir-504-v1 Dno-Mir-504-v1 Eca-Mir-504-v1 Ete-Mir-504-v1 Hsa-Mir-504-v1 Laf-Mir-504 Mml-Mir-504-v1 Mmr-Mir-504-v1 Mmu-Mir-504-v1 Ocu-Mir-504-v1 Rno-Mir-504-v1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 144853287-144853345 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAUGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGUGGAAUGUUGAAUCA G- - G A-| UGUAU GCU CUGU UGGGAGACCCUG UCUGCACUCU UC U CGG GACA ACCCUUUGGGAC GGACGUGAGG AG C GUAUGCCACCAUCAGACA GA U G GA^ UCAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Pab-Mir-504-v1_5p |
| mirBase accession | None |
| Sequence |
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
|
| Star sequence | Pab-Mir-504-v1_3p* |
| mirBase accession | None |
| Sequence |
37- GGGAGUGCAGGGCAGGGUUUCC -59
Get sequence
|
