MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-504-v2 
Orthologues Bta-Mir-504-v1  Cfa-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 144853287-144853345 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAUG
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Structure
        10        20          30        40        50         
GAGUGGAAUGUUGAAUCA   G-    -            G          A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                  CGG  GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
GUAUGCCACCAUCAGACA   GA    U            G          GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-504-v1_5p
mirBase accessionNone
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
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Star sequence

Pab-Mir-504-v1_3p*
mirBase accessionNone
Sequence 
37- GGGAGUGCAGGGCAGGGUUUCC -59
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