| MirGeneDB ID | Pab-Mir-504-v2 |
|---|---|
| Family name | MIR-504 (all species) |
| Seed | ACCCUGG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-504-v1 |
| Orthologues | Bta-Mir-504-v2 Cfa-Mir-504-v2 Cja-Mir-504-v2 Cpo-Mir-504-v2 Dno-Mir-504-v2 Eca-Mir-504-v2 Ete-Mir-504-v2 Hsa-Mir-504-v2 Laf-Mir-504 Mml-Mir-504-v2 Mmr-Mir-504-v2 Mmu-Mir-504-v2 Ocu-Mir-504-v2 Rno-Mir-504-v2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 144853288-144853344 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAUGet precursor sequence |
| Structure | 10 20 30 40 50 AGUGGAAUGUUGAAUCAG- G - G A-| UGUAU CU CUGU UGGGAGACCCUG UCUGCACUCU UC U GG GACA ACCCUUUGGGAC GGACGUGAGG AG C UAUGCCACCAUCAGACACG A U G GA^ UCAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Dicer cut +1 on both arms. |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Mature sequence | Pab-Mir-504-v2_5p |
| mirBase accession | None |
| Sequence |
0- GACCCUGGUCUGCACUCUAUC -21
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|
| Star sequence | Pab-Mir-504-v2_3p* |
| mirBase accession | None |
| Sequence |
36- GGGAGUGCAGGGCAGGGUUUC -57
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|
