MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cja-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 144853288-144853344 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAU
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Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUCAG-  G    -            G          A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                   GG GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
UAUGCCACCAUCAGACACG  A    U            G          GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-504-v2_5p
mirBase accessionNone
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
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Star sequence

Pab-Mir-504-v2_3p*
mirBase accessionNone
Sequence 
36- GGGAGUGCAGGGCAGGGUUUC -57
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