MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-504
Paralogues Cpo-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cja-Mir-504-v2  Dno-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_79: 3501376-3501432 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-504-v2)		 Mir-504-v1 scaffold_79: 3501375-3501433 [+] UCSC
Mir-504-v2 scaffold_79: 3501376-3501432 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGUGAAACGCUGACCCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUGUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACGGCAU
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Structure
        10         20         30        40         50       
AGUGAAACGCUGACCCAG-  G    -            G     A    A-| UGUGU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UACGGCACCAUCGGACACG  A    U            G     C    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-504-v2_5p
mirBase accessionMIMAT0047309
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
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Star sequence

Cpo-Mir-504-v2_3p*
mirBase accessionMIMAT0047310
Sequence 
36- GGGAGCGCAGGGCAGGGUUUC -57
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