MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-504
Paralogues Cfa-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cja-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 108693076-108693132 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v2)		 Mir-504-v1 chrX: 108693075-108693133 [-] UCSC Ensembl
Mir-504-v2 chrX: 108693076-108693132 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGAAUGUUGAAUCGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCCA
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUCGG-  G    -            G     A    A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     C
ACCGCCACCAUCGGACACG  A    U            G     C    GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-504-v2_5p
mirBase accessionMIMAT0009907
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
Proposed targets TargetScanVert: cfa-miR-504
miRDB: MIMAT0009907
Star sequence

Cfa-Mir-504-v2_3p*
mirBase accessionNone
Sequence 
36- GGGAGCGCAGGGCAGGGUUUC -57
Get sequence