MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-504
Paralogues Dno-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cja-Mir-504-v2  Cpo-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH582387: 296733-296789 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v2)		 Mir-504-v1 JH582387: 296732-296790 [+] UCSC Ensembl
Mir-504-v2 JH582387: 296733-296789 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGCCUGCACUCUGUCUGUAUGUUUAUUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCGCAGGCUACCACCAUGC
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUCAG-  G    -            G     A    G-| UGUAU 
                   CU CUGU UGGGAGACCCUG CCUGC CUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACG GAGG  AG     U
CGUACCACCAUCGGACGCG  A    U            G     C    GA^ UUAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Dno-Mir-504-v2_5p
mirBase accessionMIMAT0047946
Sequence 
0- GACCCUGGCCUGCACUCUGUC -21
Get sequence
Star sequence

Dno-Mir-504-v2_3p* (predicted)
mirBase accessionMIMAT0047947
Sequence 
36- GGGAGCGCAGGGCAGGGUUUC -57
Get sequence