MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-504
Paralogues Ocu-Mir-504-v1 
Orthologues Bta-Mir-504-v2  Cfa-Mir-504-v2  Cja-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Eca-Mir-504-v2  Ete-Mir-504-v2  Hsa-Mir-504-v2  Laf-Mir-504  Mml-Mir-504-v2  Mmr-Mir-504-v2  Mmu-Mir-504-v2  Pab-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 1830936-1830992 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v2)		 Mir-504-v1 chrUn0002: 1830935-1830993 [-] UCSC Ensembl
Mir-504-v2 chrUn0002: 1830936-1830992 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGAAUGUUGAAUUAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCAUAUUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCAU
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Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUUAG-  G    -            G          A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGCACUCU  UC     G
                   GG GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
UACGCCACCAUCGGACACG  A    U            G          GA^ UUAUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-504-v2_5p (predicted)
mirBase accessionMIMAT0048501
Sequence 
0- GACCCUGGUCUGCACUCUAUC -21
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Star sequence

Ocu-Mir-504-v2_3p* (predicted)
mirBase accessionMIMAT0048502
Sequence 
36- GGGAGUGCAGGGCAGGGUUUC -57
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