MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-504
Paralogues Cfa-Mir-504-v2 
Orthologues Bta-Mir-504-v1  Cja-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Eca-Mir-504-v1  Ete-Mir-504-v1  Hsa-Mir-504-v1  Laf-Mir-504  Mml-Mir-504-v1  Mmr-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Pab-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 108693075-108693133 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 chrX: 108693075-108693133 [-] UCSC Ensembl
Mir-504-v2 chrX: 108693076-108693132 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUGGAAUGUUGAAUCGGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUGCUUACUGAAGGGAGCGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGGCUACCACCGCCAU
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Structure
        10        20          30        40        50         
AAGUGGAAUGUUGAAUCG   G-    -            G     A    A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGC CUCU  UC     G
                  CGG  GACA ACCCUUUGGGAC GGACG GAGG  AG     C
UACCGCCACCAUCGGACA   GA    U            G     C    GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-504-v1_5p
mirBase accessionMIMAT0009907
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
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Proposed targets TargetScanVert: cfa-miR-504
miRDB: MIMAT0009907
Star sequence

Cfa-Mir-504-v1_3p*
mirBase accessionNone
Sequence 
37- GGGAGCGCAGGGCAGGGUUUCC -59
Get sequence