MirGeneDB 2.1
MirGeneDB ID

Hsa-Mir-504-v1

Family name MIR-504 (all species)
Seed GACCCUG
Species Human (Homo sapiens)
MiRBase ID hsa-mir-504
Paralogues Hsa-Mir-504-v2 
Orthologues Bta-Mir-504  Cfa-Mir-504-v1  Cpo-Mir-504-v1  Dno-Mir-504-v1  Ete-Mir-504-v1  Mml-Mir-504-v1  Mmu-Mir-504-v1  Ocu-Mir-504-v1  Rno-Mir-504-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)		 chrX: 138667723-138667781 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v1)		 Mir-504-v1 chrX: 138667723-138667781 [-] UCSC Ensembl
Mir-504-v2 chrX: 138667724-138667780 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAUG
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Structure
        10        20          30        40        50         
GAGUGGAAUGUUGAAUCA   G-    -            G          A-| UGUAU 
                  GCU  CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                  CGG  GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
GUAUGCCACCAUCAGACA   GA    U            G          GA^ UCAUU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Mature sequence

Hsa-Mir-504-v1_5p
mirBase accessionMIMAT0002875
Sequence 
0- AGACCCUGGUCUGCACUCUAUC -22
Get sequence
Proposed targets microrna.org: MIMAT0002875
miRDB: MIMAT0002875
Star sequence

Hsa-Mir-504-v1_3p*
mirBase accessionMIMAT0026612
Sequence 
37- GGGAGUGCAGGGCAGGGUUUCC -59
Get sequence
Proposed targets TargetScanVert: hsa-miR-504-3p
miRDB: MIMAT0026612