| MirGeneDB ID | Cpi-Mir-204-P4 |
|---|
| Family name |
MIR-204 (all species) |
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| Seed |
UCCCUUU |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-204-3
|
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| Paralogues |
Cpi-Mir-204-P1
Cpi-Mir-204-P2
|
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| Orthologues |
Ami-Mir-204-P4
Cli-Mir-204-P4
Cmi-Mir-204-P4
Ebu-Mir-204
Gga-Mir-204-P4
Gja-Mir-204-P4
Lch-Mir-204-P4
Mun-Mir-204-P4
Pbv-Mir-204-P4
Pma-Mir-204
Spt-Mir-204-P4
Sto-Mir-204-P4
Tgu-Mir-204-P4
|
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| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(chrPic1) |
JH584473: 3350477-3350534 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CGAAAGGCCUCUCCGGUGCGCCCUGUGAGCUUCCCUUUGUCAUCCUAUGCCUGAGAGAUGCCUGGAGGCUGGGACGGUGAAGGGAAGCCCACGUGGCUGCCAACAGCCCUCACCAGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAAAGGCCUCUCCGGU- -| C A UG A U GAGAGA
GC GCC UGUG GCUUCCCUU UC UCCUA GCCU \
CG CGG GCAC CGAAGGGAA GG AGGGU CGGA U
AAGACCACUCCCGACAAC U^ U C GU C - GGUCCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
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| Mature sequence |
Cpi-Mir-204-P4_5p |
| mirBase accession | MIMAT0037827 |
|---|
| Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
|---|
| Star sequence |
Cpi-Mir-204-P4_3p* |
| mirBase accession | MIMAT0037829 |
|---|
| Sequence |
37- GCUGGGACGGUGAAGGGAAGC -58
Get sequence
|
|---|
