MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-204-P4

Family name MIR-204 (all species)
Seed UCCCUUU
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-204-P1  Ami-Mir-204-P2 
Orthologues Cli-Mir-204-P4  Cmi-Mir-204-P4  Cpi-Mir-204-P4  Ebu-Mir-204  Gga-Mir-204-P4  Gja-Mir-204-P4  Lch-Mir-204-P4  Mun-Mir-204-P4  Pbv-Mir-204-P4  Pma-Mir-204  Spt-Mir-204-P4  Sto-Mir-204-P4  Tgu-Mir-204-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710448.1: 1273114-1273171 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUGAAAGCCUCUCCCCUGCGCUCUGUGAGCUUCCCUUUGUCAUCCUAUGCCUGAGAGAUGCCUGGAGGCUGGGACGGUGAAGGGAAGCCCACGGGGCUGCCACCAGACCUCUGCAGAG
Get precursor sequence
Structure
        10          20        30        40        50         
CUGAAAGCCUCUCCCCU-  -|       A         UG  A     U    GAGAGA 
                  GC GCUCUGUG GCUUCCCUU  UC UCCUA GCCU      \
                  CG CGGGGCAC CGAAGGGAA  GG AGGGU CGGA      U
GAGACGUCUCCAGACCAC  U^       C         GU  C     -    GGUCCG 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-204-P4_5p
mirBase accessionNone
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
Star sequence

Ami-Mir-204-P4_3p*
mirBase accessionNone
Sequence 
37- GCUGGGACGGUGAAGGGAAGC -58
Get sequence