MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-204

Family name MIR-204 (all species)
Seed UCCCUUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-204
Paralogues
Orthologues Aca-Mir-204-P1  Aca-Mir-204-P2  Ami-Mir-204-P1  Ami-Mir-204-P2  Ami-Mir-204-P4  Bta-Mir-204-P1  Bta-Mir-204-P2  Cfa-Mir-204-P1  Cfa-Mir-204-P2  Cja-Mir-204-P1  Cja-Mir-204-P2  Cli-Mir-204-P1  Cli-Mir-204-P2  Cli-Mir-204-P4  Cmi-Mir-204-P1  Cmi-Mir-204-P2  Cmi-Mir-204-P4  Cpi-Mir-204-P1  Cpi-Mir-204-P2  Cpi-Mir-204-P4  Cpo-Mir-204-P1  Cpo-Mir-204-P2  Dno-Mir-204-P1  Dno-Mir-204-P2  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Dre-Mir-204-P2  Ebu-Mir-204  Eca-Mir-204-P1  Eca-Mir-204-P2  Ete-Mir-204-P2  Gga-Mir-204-P1  Gga-Mir-204-P2  Gga-Mir-204-P4  Gja-Mir-204-P1  Gja-Mir-204-P2  Gja-Mir-204-P4  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Gmo-Mir-204-P2  Hsa-Mir-204-P1  Hsa-Mir-204-P2  Laf-Mir-204-P1  Laf-Mir-204-P2  Lch-Mir-204-P1  Lch-Mir-204-P2  Lch-Mir-204-P4  Loc-Mir-204-P1  Loc-Mir-204-P2  Mal-Mir-204-P1a  Mal-Mir-204-P2  Mdo-Mir-204-P1  Mdo-Mir-204-P2  Mml-Mir-204-P1  Mml-Mir-204-P2  Mmr-Mir-204-P1  Mmr-Mir-204-P2  Mmu-Mir-204-P1  Mmu-Mir-204-P2  Mun-Mir-204-P1  Mun-Mir-204-P2  Mun-Mir-204-P4  Neu-Mir-204-P1  Neu-Mir-204-P2  Oan-Mir-204-P1  Oan-Mir-204-P2  Ocu-Mir-204-P1  Ocu-Mir-204-P2  Pab-Mir-204-P1  Pab-Mir-204-P2  Pbv-Mir-204-P1  Pbv-Mir-204-P2  Pbv-Mir-204-P4  Rno-Mir-204-P1  Rno-Mir-204-P2  Sha-Mir-204-P1  Sha-Mir-204-P2  Spt-Mir-204-P1  Spt-Mir-204-P2  Spt-Mir-204-P4  Sto-Mir-204-P1  Sto-Mir-204-P2  Sto-Mir-204-P4  Tgu-Mir-204-P1  Tgu-Mir-204-P2  Tgu-Mir-204-P4  Tni-Mir-204-P1a  Tni-Mir-204-P2  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xla-Mir-204-P2a  Xla-Mir-204-P2b  Xtr-Mir-204-P1  Xtr-Mir-204-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046125.1: 4465635-4465692 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGAGAGGACUGUCUGCGGUUGGAGGGAUUCCCUUUGUCAUCCUAUGCCUGUAAUCGCCUCUAAGGCAAGGACAGCAAAGGGGACCCCUGUACCCAGUCCAGCAGCGGAGCGCGCG
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Structure
        10          20        30        40        50         
GCGAGAGAGGACUGUCUGC--| U  G    A          CA    A     GUAAUC 
                     GG UG AGGG UUCCCUUUGU  UCCU UGCCU      \
                     CC AU UCCC AGGGGAAACG  AGGA ACGGA      G
GCGCGCGAGGCGACGACCUGA^ C  G    C          AC    -     AUCUCC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-204_5p
mirBase accessionMIMAT0019515
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCUG -23
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Star sequence

Pma-Mir-204_3p*
mirBase accessionMIMAT0019516
Sequence 
36- GGCAAGGACAGCAAAGGGGACC -58
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