MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-204-P2

Family name MIR-204 (all species)
Seed UCCCUUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-204-3
Paralogues Gmo-Mir-204-P1a  Gmo-Mir-204-P1b 
Orthologues Aca-Mir-204-P2  Ami-Mir-204-P2  Bta-Mir-204-P2  Cfa-Mir-204-P2  Cja-Mir-204-P2  Cli-Mir-204-P2  Cmi-Mir-204-P2  Cpi-Mir-204-P2  Cpo-Mir-204-P2  Dno-Mir-204-P2  Dre-Mir-204-P2  Ebu-Mir-204  Eca-Mir-204-P2  Ete-Mir-204-P2  Gga-Mir-204-P2  Gja-Mir-204-P2  Hsa-Mir-204-P2  Laf-Mir-204-P2  Lch-Mir-204-P2  Loc-Mir-204-P2  Mal-Mir-204-P2  Mdo-Mir-204-P2  Mml-Mir-204-P2  Mmr-Mir-204-P2  Mmu-Mir-204-P2  Mun-Mir-204-P2  Neu-Mir-204-P2  Oan-Mir-204-P2  Ocu-Mir-204-P2  Pab-Mir-204-P2  Pbv-Mir-204-P2  Pma-Mir-204  Rno-Mir-204-P2  Sha-Mir-204-P2  Spt-Mir-204-P2  Sto-Mir-204-P2  Tgu-Mir-204-P2  Tni-Mir-204-P2  Xla-Mir-204-P2a  Xla-Mir-204-P2b  Xtr-Mir-204-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig320882: 1384-1443 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUUCAUUGGAGUCCUGUGACCAAUGGCCUUCCCUUUGUCAUCCUAUGCCUGGGCUCAUACUAAAGAGGCUGGGGAGGCCAAGGGACGCCCAGUCGUCACACCAGCAUCCCCCCAGCAU
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Structure
        10          20        30        40        50          
AGGUUCAUUGGAGUCCU--|    CAA   CCU      U   AU    U    GGGCUCA 
                   GUGAC   UGG   UCCCUU GUC  CCUA GCCU       \
                   CACUG   ACC   AGGGAA CGG  GGGU CGGA       U
UACGACCCCCCUACGACCA^    CUG   CGC      C   AG    -    GAAAUCA 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-204-P2_5p
mirBase accessionMIMAT0044029
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Gmo-Mir-204-P2_3p*
mirBase accessionNone
Sequence 
39- GCUGGGGAGGCCAAGGGACGC -60
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