| MirGeneDB ID | Lch-Mir-204-P2 |
|---|---|
| Family name | MIR-204 (all species) |
| Seed | UCCCUUU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-204-P1 Lch-Mir-204-P4 |
| Orthologues | Aca-Mir-204-P2 Ami-Mir-204-P2 Bta-Mir-204-P2 Cfa-Mir-204-P2 Cja-Mir-204-P2 Cli-Mir-204-P2 Cmi-Mir-204-P2 Cpi-Mir-204-P2 Cpo-Mir-204-P2 Dno-Mir-204-P2 Dre-Mir-204-P2 Ebu-Mir-204 Eca-Mir-204-P2 Ete-Mir-204-P2 Gga-Mir-204-P2 Gja-Mir-204-P2 Gmo-Mir-204-P2 Hsa-Mir-204-P2 Laf-Mir-204-P2 Loc-Mir-204-P2 Mal-Mir-204-P2 Mdo-Mir-204-P2 Mml-Mir-204-P2 Mmr-Mir-204-P2 Mmu-Mir-204-P2 Mun-Mir-204-P2 Neu-Mir-204-P2 Oan-Mir-204-P2 Ocu-Mir-204-P2 Pab-Mir-204-P2 Pbv-Mir-204-P2 Pma-Mir-204 Rno-Mir-204-P2 Sha-Mir-204-P2 Spt-Mir-204-P2 Sto-Mir-204-P2 Tgu-Mir-204-P2 Tni-Mir-204-P2 Xla-Mir-204-P2a Xla-Mir-204-P2b Xtr-Mir-204-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127310.1: 529915-529974 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | GUUGAACAUCUGUGCAUGUGGCCCGUGGGCUUCCCUUUGUCAUCCUAUGCCUGAGAAUAAAUGAAGGGGGCUGGGAAGGCAAAGGGAUGUUCAACUGUCAUCACUAGCAUCUGCUUUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 GUUGAACAUCUGUGCAU--| CCG U A U GAGAAUA GUGGC UGGGC UCCCUUUGUC UCCUA GCCU \ UACUG ACUUG AGGGAAACGG AGGGU CGGG A UAGUUUCGUCUACGAUCAC^ UCA U A - GGAAGUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-204-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
| Star sequence | Lch-Mir-204-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- GCUGGGAAGGCAAAGGGAUGU -60
Get sequence
|
