MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-204-P4

Family name MIR-204 (all species)
Seed UCCCUUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-204-P1  Lch-Mir-204-P2 
Orthologues Ami-Mir-204-P4  Cli-Mir-204-P4  Cmi-Mir-204-P4  Cpi-Mir-204-P4  Ebu-Mir-204  Gga-Mir-204-P4  Gja-Mir-204-P4  Mun-Mir-204-P4  Pbv-Mir-204-P4  Pma-Mir-204  Spt-Mir-204-P4  Sto-Mir-204-P4  Tgu-Mir-204-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126742.1: 936419-936476 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCCGUGUUUGCUCCAGUGAAAUGGGGGCUUCCCUUUCUCAUCCUAUGCCUGAGAAUUCACUGAAGGCUGGGAAGGUAAAGGGAGGCUCACAUCUCACCCUGAACACCCUGCCUUUU
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Structure
        10          20        30        40        50         
AAGCCGUGUUUGCUCCA--|   A   G            CU A     U    GAGAAU 
                   GUGA AUG GGGCUUCCCUUU  C UCCUA GCCU      \
                   CACU UAC CUCGGAGGGAAA  G AGGGU CGGA      U
UUUUCCGUCCCACAAGUCC^   C   A            UG A     -    AGUCAC 
      110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-204-P4_5p (predicted)

mirBase accessionNone
Sequence
0- UUCCCUUUCUCAUCCUAUGCCU -22
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Star sequence

Lch-Mir-204-P4_3p* (predicted)

mirBase accessionNone
Sequence
37- GCUGGGAAGGUAAAGGGAGGC -58
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