MirGeneDB ID | Cli-Mir-204-P4 |
Family name |
MIR-204 (all species) |
Seed |
UCCCUUU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-204-3
|
Paralogues |
Cli-Mir-204-P1
Cli-Mir-204-P2
|
Orthologues |
Ami-Mir-204-P4
Cmi-Mir-204-P4
Cpi-Mir-204-P4
Ebu-Mir-204
Gga-Mir-204-P4
Gja-Mir-204-P4
Lch-Mir-204-P4
Mun-Mir-204-P4
Pbv-Mir-204-P4
Pma-Mir-204
Spt-Mir-204-P4
Sto-Mir-204-P4
Tgu-Mir-204-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold194: 1274466-1274522 [+]
|
Precursor (pre-Mir +30nt flank) |
GAGGGCCCGCGGCCCCUGCCCCCUGUGAGCUUCCCUUUGUCAUCCUAUGCCUGAGCCAUGGCCGAGGCUGGGACGGUGAAGGGAGGCCCACGGGCUGCCACAGCCCCGAUGCCACGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGGGCCCGCGGCCCCU--| CC A UG A U GAGCC
GC CCUGUG GCUUCCCUU UC UCCUA GCCU A
CG GGGCAC CGGAGGGAA GG AGGGU CGGA U
GGCACCGUAGCCCCGACAC^ UC C GU C - GCCGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-204-P4_5p |
mirBase accession | MIMAT0038580 |
Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
Star sequence |
Cli-Mir-204-P4_3p* |
mirBase accession | MIMAT0038583 |
Sequence |
36- GCUGGGACGGUGAAGGGAGGC -57
Get sequence
|