MirGeneDB ID | Cli-Mir-204-P1 |
Family name |
MIR-204 (all species) |
Seed |
UCCCUUU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-204-2
|
Paralogues |
Cli-Mir-204-P2
Cli-Mir-204-P4
|
Orthologues |
Aca-Mir-204-P1
Ami-Mir-204-P1
Bta-Mir-204-P1
Cfa-Mir-204-P1
Cja-Mir-204-P1
Cmi-Mir-204-P1
Cpi-Mir-204-P1
Cpo-Mir-204-P1
Dno-Mir-204-P1
Dre-Mir-204-P1a
Dre-Mir-204-P1b
Ebu-Mir-204
Eca-Mir-204-P1
Gga-Mir-204-P1
Gja-Mir-204-P1
Gmo-Mir-204-P1a
Gmo-Mir-204-P1b
Hsa-Mir-204-P1
Laf-Mir-204-P1
Lch-Mir-204-P1
Loc-Mir-204-P1
Mal-Mir-204-P1a
Mdo-Mir-204-P1
Mml-Mir-204-P1
Mmr-Mir-204-P1
Mmu-Mir-204-P1
Mun-Mir-204-P1
Neu-Mir-204-P1
Oan-Mir-204-P1
Ocu-Mir-204-P1
Pab-Mir-204-P1
Pbv-Mir-204-P1
Pma-Mir-204
Rno-Mir-204-P1
Sha-Mir-204-P1
Spt-Mir-204-P1
Sto-Mir-204-P1
Tgu-Mir-204-P1
Tni-Mir-204-P1a
Xla-Mir-204-P1c
Xla-Mir-204-P1d
Xtr-Mir-204-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold506: 653116-653173 [+]
|
Precursor (pre-Mir +30nt flank) |
AAGGCUACUGAGACCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCCAUCGGCCAGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGCUACUGAGACCAUG--| CUG U CA A GGAGAU
UGAC UGGGC UCCCUUUGU UCCU UGCCU \
GCUG ACUCG AGGGAAACG AGGG ACGGA C
ACCGACCGGCUACCUUCUCU^ UCG U AC - GUGACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-204-P1_5p |
mirBase accession | MIMAT0038580 |
Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
Star sequence |
Cli-Mir-204-P1_3p* |
mirBase accession | MIMAT0038582 |
Sequence |
37- GCAGGGACAGCAAAGGGAUGC -58
Get sequence
|