MirGeneDB 3.0
MirGeneDB ID

Oan-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-204
Paralogues Oan-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Eca-Mir-204-P1  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1a  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)		 NC_041732.1: 54081453-54081510 [+]
Precursor
(pre-Mir +30nt flank)
GACCGCCGGUGAUCCUUGUGACUGCUGAGCUUCCCUUUGUCAUCCUAUGCCUGGAAGUCAAAAUGGGGCAGGGACAGCAAAGGGAUGAUCAACCGUCACCUCCAACACCGAGAUGUGU
Get precursor sequence
Structure
        10          20        30        40        50         
GACCGCCGGUGAUCCUU--|    UGC   GCU         CA    A     GGAAGU 
                   GUGAC   UGA   UCCCUUUGU  UCCU UGCCU      \
                   CACUG   ACU   AGGGAAACG  AGGG ACGGG      C
UGUGUAGAGCCACAACCUC^    CCA   AGU         AC    -     GUAAAA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Oan-Mir-204-P1_5p
mirBase accessionMIMAT0006841
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
Star sequence

Oan-Mir-204-P1_3p*
mirBase accessionMIMAT0006842
Sequence 
37- GCAGGGACAGCAAAGGGAUGA -58
Get sequence