Mir-204-P1

MirGeneDB ID

Cpo-Mir-204-P1

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-211

Paralogues

Cpo-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_10: 48990198-48990254 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CUGCUUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGCUCCAGAAGCUUU

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Structure

        10          20        30        40        50        
CUGCUUCACCCAGCCAC--|    UUG    CU         CA     U    AGGGC 
                   GUGAC   UGGG  UCCCUUUGU  UCCUU GCCU     U
                   CACUG   ACUC  GGGGAAACG  AGGGA CGGG     C
UUUCGAAGACCUCGUCUGC^    UUG    AU         UC     -    AUAGU 
     110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-204-P1_5p

mirBase accession

MIMAT0047111

Sequence

0- UUCCCUUUGUCAUCCUUUGCCU -22

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Star sequence

Cpo-Mir-204-P1_3p*

mirBase accession

MIMAT0047112

Sequence

36- GCAGGGACUGCAAAGGGGUAC -57

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