MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-211
Paralogues Cpo-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1b  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1b  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_10: 48990198-48990254 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUGCUUCACCCAGCCACGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAUAGGGCAGGGACUGCAAAGGGGUACUCAGUUGUCACCGUCUGCUCCAGAAGCUUU
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Structure
        10          20        30        40        50        
CUGCUUCACCCAGCCAC--|    UUG    CU         CA     U    AGGGC 
                   GUGAC   UGGG  UCCCUUUGU  UCCUU GCCU     U
                   CACUG   ACUC  GGGGAAACG  AGGGA CGGG     C
UUUCGAAGACCUCGUCUGC^    UUG    AU         UC     -    AUAGU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-204-P1_5p

mirBase accessionMIMAT0047111
Sequence
0- UUCCCUUUGUCAUCCUUUGCCU -22
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Star sequence

Cpo-Mir-204-P1_3p*

mirBase accessionMIMAT0047112
Sequence
36- GCAGGGACUGCAAAGGGGUAC -57
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