Mir-204-P1a

MirGeneDB ID

Tni-Mir-204-P1a

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-204a

Paralogues

Tni-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Xtr-Mir-204-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 7729309-7729365 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGGACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGACUUCAUCCCCCAC

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Structure

        10          20        30        40        50        
GCUGGACAGAGAACUCU--|    CUG     U         CA    A     GGAGC 
                   GUGAC   UGGGC UCCCUUUGU  UCCU UGCCU     U
                   CACUG   ACUCG AGGGAAACG  AGGG ACGGA     C
CACCCCCUACUUCAGUCAC^    CCG     U         AC    -     AUAGG 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-204-P1a_5p

mirBase accession

MIMAT0003102

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Tni-Mir-204-P1a_3p*

mirBase accession

None

Sequence

36- GCAGGGACAGCAAAGGGAUGC -57

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