MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-204-P1a

Family name MIR-204 (all species)
Seed UCCCUUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-204a
Paralogues Tni-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Ebu-Mir-204  Eca-Mir-204-P1  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Xtr-Mir-204-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
13: 7729309-7729365 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGACAGAGAACUCUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGCUCGGAUAAGGCAGGGACAGCAAAGGGAUGCUCAGCCGUCACCACUGACUUCAUCCCCCAC
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Structure
        10          20        30        40        50        
GCUGGACAGAGAACUCU--|    CUG     U         CA    A     GGAGC 
                   GUGAC   UGGGC UCCCUUUGU  UCCU UGCCU     U
                   CACUG   ACUCG AGGGAAACG  AGGG ACGGA     C
CACCCCCUACUUCAGUCAC^    CCG     U         AC    -     AUAGG 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-204-P1a_5p

mirBase accessionMIMAT0003102
Sequence
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Tni-Mir-204-P1a_3p*

mirBase accessionNone
Sequence
36- GCAGGGACAGCAAAGGGAUGC -57
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