| MirGeneDB ID | Lch-Mir-204-P1 |
|---|---|
| Family name | MIR-204 (all species) |
| Seed | UCCCUUU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-204-P2 Lch-Mir-204-P4 |
| Orthologues | Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126577.1: 3208970-3209027 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CUCGGCACAGUGACCAUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGAGUUAGUAGCAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCAUCACUGUCAUCAGCCAACUAGet precursor sequence |
| Structure | 10 20 30 40 50 CUCGGCACAGUGACCAU--| CUG U CA A GGAGUU GUGAC UGGGU UCCCUUUGU UCCU UGCCU \ UACUG ACUCG AGGGAAACG AGGG ACGGA A AUCAACCGACUACUGUCAC^ UCG U AC - ACGAUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-204-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
| Star sequence | Lch-Mir-204-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- GCAGGGACAGCAAAGGGAUGC -58
Get sequence
|
