Mir-204-P1

MirGeneDB ID

Ami-Mir-204-P1

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-204-2

Paralogues

Ami-Mir-204-P2 Ami-Mir-204-P4

Orthologues

Aca-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713709.1: 32217618-32217675 [+] UCSC

Precursor
(pre-Mir +30nt flank)

AAGAUUGCAGUGACCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCAUAGUGAGGCAGGGACAACAAAGGGAUGCUCAAUUGUCAUCUCGUGCAUCGGCCAGACA

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Structure

        10          20        30        40        50         
AAGAUUGCAGUGACCAU--|    CUG     U         CA    A     GGAGAU 
                   GUGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                   UACUG   ACUCG AGGGAAACA  AGGG ACGGA      C
ACAGACCGGCUACGUGCUC^    UUA     U         AC    -     GUGAUA 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-204-P1_5p

mirBase accession

MIMAT0038225

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Ami-Mir-204-P1_3p*

mirBase accession

MIMAT0038227

Sequence

37- GCAGGGACAACAAAGGGAUGC -58

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