MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-204-2
Paralogues Ami-Mir-204-P2  Ami-Mir-204-P4 
Orthologues Aca-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1b  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1b  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 32217618-32217675 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAGAUUGCAGUGACCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCAUAGUGAGGCAGGGACAACAAAGGGAUGCUCAAUUGUCAUCUCGUGCAUCGGCCAGACA
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Structure
        10          20        30        40        50         
AAGAUUGCAGUGACCAU--|    CUG     U         CA    A     GGAGAU 
                   GUGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                   UACUG   ACUCG AGGGAAACA  AGGG ACGGA      C
ACAGACCGGCUACGUGCUC^    UUA     U         AC    -     GUGAUA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-204-P1_5p
mirBase accessionMIMAT0038225
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Ami-Mir-204-P1_3p*
mirBase accessionMIMAT0038227
Sequence 
37- GCAGGGACAACAAAGGGAUGC -58
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