Mir-204-P1

MirGeneDB ID

Rno-Mir-204-P1

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-211

Paralogues

Rno-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 125042144-125042201 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGUUCAGCUUGGACCUGUGACCUCUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGCCUCUGAGUGGGGCAAGGACAGCAAAGGGGGGCUCAGUGGUCACCUCUACUGCAGAGAGUUUU

Get precursor sequence

Structure

        10          20        30        40        50         
CAGUUCAGCUUGGACCU--|     U                CA     U    AGGCCU 
                   GUGACC CUGGGCUUCCCUUUGU  UCCUU GCCU      \
                   CACUGG GACUCGGGGGGAAACG  AGGAA CGGG      C
UUUUGAGAGACGUCAUCUC^     U                AC     -    GUGAGU 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-204-P1_5p

mirBase accession

MIMAT0000882

Sequence

0- UUCCCUUUGUCAUCCUUUGCCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000882
TargetScanVert: rno-miR-211-5p
miRDB: MIMAT0000882

Star sequence

Rno-Mir-204-P1_3p*

mirBase accession

MIMAT0017157

Sequence

37- GCAAGGACAGCAAAGGGGGGC -58

Get sequence

Proposed targets

TargetScanVert: rno-miR-211-3p
miRDB: MIMAT0017157