Mir-204-P1

MirGeneDB ID

Cja-Mir-204-P1

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021920.1: 5221353-5221410 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACUUCGCCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUACGGCUCUGAGCAGGGCAGGGACAGCAAAGGGCUGCUCAGUUGUCACUUCCUACAGCACAGAGCUU

Get precursor sequence

Structure

        10          20        30        40        50         
CCACUUCGCCUGGCCAU--|    UUG     UU        CA     U    ACGGCU 
                   GUGAC   UGGGC  CCCUUUGU  UCCUU GCCU      \
                   CACUG   ACUCG  GGGAAACG  AGGGA CGGG      C
UUCGAGACACGACAUCCUU^    UUG     UC        AC     -    ACGAGU 
      110       100        90        80        70         60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-204-P1_5p (predicted)

mirBase accession

None

Sequence

0- UUCCCUUUGUCAUCCUUUGCCU -22

Get sequence

Star sequence

Cja-Mir-204-P1_3p* (predicted)

mirBase accession

None

Sequence

37- GCAGGGACAGCAAAGGGCUGC -58

Get sequence