Mir-204-P1c

MirGeneDB ID

Xla-Mir-204-P1c

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-204-P1d Xla-Mir-204-P2a Xla-Mir-204-P2b

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Xtr-Mir-204-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 87040550-87040607 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGAGAACCUGGAAUUUGUGACCCAUGGGGUUCCCUUUGUCAUCCUAUGCCUGAGAAUACUGGAGAGGCAGGGACAGCAAGGGGACGCUCAGAUGUCACCACUUCACCGGAUGCACCA

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Structure

        10          20         30        40        50         
GAGAGAACCUGGAAUUU--     CCA    -| U        CA    A     GAGAAU 
                   GUGAC   UGGG GU CCCUUUGU  UCCU UGCCU      \
                   CACUG   ACUC CA GGGGAACG  AGGG ACGGA      A
ACCACGUAGGCCACUUCAC     UAG    G^ -        AC    -     GAGGUC 
      110       100        90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-204-P1c_5p

mirBase accession

None

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Xla-Mir-204-P1c_3p*

mirBase accession

None

Sequence

37- GCAGGGACAGCAAGGGGACGC -58

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