MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-204-1
Paralogues Xtr-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Eca-Mir-204-P1  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1a  Xla-Mir-204-P1c  Xla-Mir-204-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr3: 87225673-87225730 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAGGACUUCGACAUUGUGACCCAUGGGCUUCCCUUUGUCAUCCUAUGCCUGAGAAUGCUGGAGAGGCAGGGACAGCAAAGGGAUGCUCAGAUGUUACCUCUUGCAUCACAUGCAUG
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Structure
        10          20        30        40        50         
UAGAGGACUUCGACAUU--|    CCA     U         CA    A     GAGAAU 
                   GUGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                   CAUUG   ACUCG AGGGAAACG  AGGG ACGGA      G
GUACGUACACUACGUUCUC^    UAG     U         AC    -     GAGGUC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-204-P1_5p
mirBase accessionMIMAT0003696
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Proposed targets TargetScanVert: xtr-miR-204
Star sequence

Xtr-Mir-204-P1_3p*
mirBase accessionNone
Sequence 
37- GCAGGGACAGCAAAGGGAUGC -58
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