MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-204-P2

Family name MIR-204 (all species)
Seed UCCCUUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-204-2
Paralogues Xtr-Mir-204-P1 
Orthologues Aca-Mir-204-P2  Ami-Mir-204-P2  Bta-Mir-204-P2  Cfa-Mir-204-P2  Cja-Mir-204-P2  Cli-Mir-204-P2  Cmi-Mir-204-P2  Cpi-Mir-204-P2  Cpo-Mir-204-P2  Dno-Mir-204-P2  Dre-Mir-204-P2  Ebu-Mir-204  Eca-Mir-204-P2  Ete-Mir-204-P2  Gga-Mir-204-P2  Gja-Mir-204-P2  Gmo-Mir-204-P2  Hsa-Mir-204-P2  Laf-Mir-204-P2  Lch-Mir-204-P2  Loc-Mir-204-P2  Mal-Mir-204-P2  Mdo-Mir-204-P2  Mml-Mir-204-P2  Mmr-Mir-204-P2  Mmu-Mir-204-P2  Mun-Mir-204-P2  Neu-Mir-204-P2  Oan-Mir-204-P2  Ocu-Mir-204-P2  Pab-Mir-204-P2  Pbv-Mir-204-P2  Pma-Mir-204  Rno-Mir-204-P2  Sha-Mir-204-P2  Spt-Mir-204-P2  Sto-Mir-204-P2  Tgu-Mir-204-P2  Tni-Mir-204-P2  Xla-Mir-204-P2a  Xla-Mir-204-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr1: 117768519-117768578 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCAGAUCCUCUUCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGAGAAUAUAUGAAGGGGGCUGGGAAGGCAAAGGGACGUUCAGUUGUCAUCACCAACAUCUUUCUCUGC
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Structure
        10          20        30        40        50          
GUUCAGAUCCUCUUCAU--|    CUG     U          A     U    GAGAAUA 
                   GUGAC   UGGGC UCCCUUUGUC UCCUA GCCU       \
                   UACUG   ACUUG AGGGAAACGG AGGGU CGGG       U
CGUCUCUUUCUACAACCAC^    UUG     C          A     -    GGAAGUA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-204-P2_5p
mirBase accessionMIMAT0003696
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCUG -23
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Proposed targets TargetScanVert: xtr-miR-204
Star sequence

Xtr-Mir-204-P2_3p*
mirBase accessionNone
Sequence 
38- GGCUGGGAAGGCAAAGGGACGU -60
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