MirGeneDB ID | Cli-Mir-204-P2 |
Family name |
MIR-204 (all species) |
Seed |
UCCCUUU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-204-1
|
Paralogues |
Cli-Mir-204-P1
Cli-Mir-204-P4
|
Orthologues |
Aca-Mir-204-P2
Ami-Mir-204-P2
Bta-Mir-204-P2
Cfa-Mir-204-P2
Cja-Mir-204-P2
Cmi-Mir-204-P2
Cpi-Mir-204-P2
Cpo-Mir-204-P2
Dno-Mir-204-P2
Dre-Mir-204-P2
Ebu-Mir-204
Eca-Mir-204-P2
Ete-Mir-204-P2
Gga-Mir-204-P2
Gja-Mir-204-P2
Gmo-Mir-204-P2
Hsa-Mir-204-P2
Laf-Mir-204-P2
Lch-Mir-204-P2
Loc-Mir-204-P2
Mal-Mir-204-P2
Mdo-Mir-204-P2
Mml-Mir-204-P2
Mmr-Mir-204-P2
Mmu-Mir-204-P2
Mun-Mir-204-P2
Neu-Mir-204-P2
Oan-Mir-204-P2
Ocu-Mir-204-P2
Pab-Mir-204-P2
Pbv-Mir-204-P2
Pma-Mir-204
Rno-Mir-204-P2
Sha-Mir-204-P2
Spt-Mir-204-P2
Sto-Mir-204-P2
Tgu-Mir-204-P2
Tni-Mir-204-P2
Xla-Mir-204-P2a
Xla-Mir-204-P2b
Xtr-Mir-204-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold148: 920658-920717 [+]
|
Precursor (pre-Mir +30nt flank) |
CAACAAUAUCUGUUCAUGUGACCCGUGGACUUCCCUUUGUCAUCCUAUGCCUGAGAAUAUAUGAAGGGGGCUGGGAAGGCAAAGGGACGUUCAACUGUCAUCACUGGCAUCUUCUCUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAACAAUAUCUGUUCAU--| CCG U A U GAGAAUA
GUGAC UGGAC UCCCUUUGUC UCCUA GCCU \
UACUG ACUUG AGGGAAACGG AGGGU CGGG U
CAGUCUCUUCUACGGUCAC^ UCA C A - GGAAGUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-204-P2_5p |
mirBase accession | MIMAT0038580 |
Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
Star sequence |
Cli-Mir-204-P2_3p* |
mirBase accession | MIMAT0038581 |
Sequence |
39- GCUGGGAAGGCAAAGGGACGU -60
Get sequence
|