Mir-204-P2

MirGeneDB ID

Gga-Mir-204-P2

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-204-1

Paralogues

Gga-Mir-204-P1 Gga-Mir-204-P4

Orthologues

Aca-Mir-204-P2 Ami-Mir-204-P2 Bta-Mir-204-P2 Cfa-Mir-204-P2 Cja-Mir-204-P2 Cli-Mir-204-P2 Cmi-Mir-204-P2 Cpi-Mir-204-P2 Cpo-Mir-204-P2 Dno-Mir-204-P2 Dre-Mir-204-P2 Ebu-Mir-204 Eca-Mir-204-P2 Ete-Mir-204-P2 Gja-Mir-204-P2 Gmo-Mir-204-P2 Hsa-Mir-204-P2 Laf-Mir-204-P2 Lch-Mir-204-P2 Loc-Mir-204-P2 Mal-Mir-204-P2 Mdo-Mir-204-P2 Mml-Mir-204-P2 Mmr-Mir-204-P2 Mmu-Mir-204-P2 Mun-Mir-204-P2 Neu-Mir-204-P2 Oan-Mir-204-P2 Ocu-Mir-204-P2 Pab-Mir-204-P2 Pbv-Mir-204-P2 Pma-Mir-204 Rno-Mir-204-P2 Sha-Mir-204-P2 Spt-Mir-204-P2 Sto-Mir-204-P2 Tgu-Mir-204-P2 Tni-Mir-204-P2 Xla-Mir-204-P2a Xla-Mir-204-P2b Xtr-Mir-204-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

Z: 35192633-35192692 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAACAGUGUCUGUUCAUGUGACCCGUGGACUUCCCUUUGUCAUCCUAUGCCUGAGAAUAUAUGAAGGGGGCUGGGAAGGCAAAGGGACGUUCAACUGUCAUCAUCGGCAUCUUCUCUGAC

Get precursor sequence

Structure

        10          20        30        40        50          
CAACAGUGUCUGUUCAU--|    CCG     U          A     U    GAGAAUA 
                   GUGAC   UGGAC UCCCUUUGUC UCCUA GCCU       \
                   UACUG   ACUUG AGGGAAACGG AGGGU CGGG       U
CAGUCUCUUCUACGGCUAC^    UCA     C          A     -    GGAAGUA 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-204-P2_5p

mirBase accession

MIMAT0001156

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-204
miRDB: MIMAT0001156

Star sequence

Gga-Mir-204-P2_3p*

mirBase accession

None

Sequence

39- GCUGGGAAGGCAAAGGGACGU -60

Get sequence