Mir-204-P1a

MirGeneDB ID

Dre-Mir-204-P1a

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-204-3

Paralogues

Dre-Mir-204-P1b Dre-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xtr-Mir-204-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr25: 34590805-34590862 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGUGGUUUUGGCGUCUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUAGAGUUUGUGAUAAGGCAGGGACAGCAAAGGGAGGCUCAGCCGUCACCACUCACAUCGGCUGAUCU

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Structure

        10          20        30        40        50         
GCGUGGUUUUGGCGUCU--|    CUG               CA    A     AGAGUU 
                   GUGAC   UGGGUUUCCCUUUGU  UCCU UGCCU      \
                   CACUG   ACUCGGAGGGAAACG  AGGG ACGGA      U
UCUAGUCGGCUACACUCAC^    CCG               AC    -     AUAGUG 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-204-P1a_5p

mirBase accession

MIMAT0001279

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Dre-Mir-204-P1a_3p*

mirBase accession

MIMAT0048659

Sequence

37- GCAGGGACAGCAAAGGGAGGC -58

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