Mir-204-P4

MirGeneDB ID

Cmi-Mir-204-P4

Family name

MIR-204 (all species)

Seed

UCCCUUU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-204-P1 Cmi-Mir-204-P2

Orthologues

Ami-Mir-204-P4 Cli-Mir-204-P4 Cpi-Mir-204-P4 Ebu-Mir-204 Gga-Mir-204-P4 Gja-Mir-204-P4 Lch-Mir-204-P4 Mun-Mir-204-P4 Pbv-Mir-204-P4 Pma-Mir-204 Spt-Mir-204-P4 Sto-Mir-204-P4 Tgu-Mir-204-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636146.1: 13447-13505 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUGAUGGUUCCUCAUGUGGCUUAUGAUCUUCCCUUUGUCAUCCUAUGCCUGAUGGUAAUGAUGGGGGCUGGGACGGUAAAGGGACGUUCAGGUGUCAAUCACUCCGUCGCUGUGGCU

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Structure

        10          20        30        40        50         
GUGUGAUGGUUCCUCAUG--|   UUA   UCU       GU A     U    GAUGGU 
                    UGGC   UGA   UCCCUUU  C UCCUA GCCU      A
                    ACUG   ACU   AGGGAAA  G AGGGU CGGG      A
UCGGUGUCGCUGCCUCACUA^   UGG   UGC       UG C     -    GGUAGU 
       110       100        90        80         70        60

Deep sequencing

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Comment

The 3' end of the 5p arm although templated appears to be monouridylated as it generates a 3 nt Dicer offset.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-204-P4_5p

mirBase accession

None

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Cmi-Mir-204-P4_3p*

mirBase accession

None

Sequence

38- GCUGGGACGGUAAAGGGACGU -59

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