MirGeneDB ID | Pbv-Mir-204-P4 |
Family name |
MIR-204 (all species) |
Seed |
UCCCUUU |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-204-3
|
Paralogues |
Pbv-Mir-204-P1
Pbv-Mir-204-P2
|
Orthologues |
Ami-Mir-204-P4
Cli-Mir-204-P4
Cmi-Mir-204-P4
Cpi-Mir-204-P4
Ebu-Mir-204
Gga-Mir-204-P4
Gja-Mir-204-P4
Lch-Mir-204-P4
Mun-Mir-204-P4
Pma-Mir-204
Spt-Mir-204-P4
Sto-Mir-204-P4
Tgu-Mir-204-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE956236.1: 133468-133526 [-]
|
Precursor (pre-Mir +30nt flank) |
CCACCCACCACCCCGCUUGGCUCUGUAGCUUUCCCUUUGUCAUCCUAUGCCUGAGAAAUUCAGGGAGGCUGGGACGGUGAAGGGAAGCCCACAGCGUUAUAGUUCCAGCUGGAGGAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCACCCACCACCCCGCU--- U A-| U UG A U GAGAAA
UGGC CUGU GCUU CCCUU UC UCCUA GCCU \
AUUG GACA CGAA GGGAA GG AGGGU CGGA U
ACGAGGAGGUCGACCUUGAU C CC^ - GU C - GGGACU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pbv-Mir-204-P4_5p |
mirBase accession | MIMAT0039006 |
Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
|
Star sequence |
Pbv-Mir-204-P4_3p* |
mirBase accession | MIMAT0039008 |
Sequence |
37- GCUGGGACGGUGAAGGGAAGCC -59
Get sequence
|