MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-506-o7a

Family name MIR-506 (all species)
Seed ACCAAGG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-892
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Cpo-Mir-506-P6 
Orthologues Cfa-Mir-506-P7  Hsa-Mir-506-P7a  Mml-Mir-506-P7a  Mmu-Mir-506-P7  Rno-Mir-506-P7 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 3931993-3932049 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-o7a)		 Mir-506-o7a scaffold_84: 3931993-3932049 [+] UCSC
Mir-506-o7c scaffold_84: 3933561-3933617 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCUGCCUUCAGCGUGCUGUGUGCCACGUCCUAUUCAGAAUGGCCUUGGUCAUUUGGAUUAUAUGUCACCAAGGUCUUUCUGAGUAGAAUAGGGCUCACCAAAUUCUUCAUUUGUAGU
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Structure
        10          20        30        40        50        
UCUGCCUUCAGCGUGCU--|  U   AC  C          U         CAUUUGGA 
                   GUG GCC  GU CUAUUCAGAA GGCCUUGGU        \
                   CAC CGG  UA GAUGAGUCUU CUGGAACCA        U
UGAUGUUUACUUCUUAAAC^  U   GA  A          U         CUGUAUAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-506-o7a_5p*
mirBase accessionMIMAT0047231
Sequence 
0- UAUUCAGAAUGGCCUUGGUCA -21
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Mature sequence

Cpo-Mir-506-o7a_3p
mirBase accessionMIMAT0047232
Sequence 
35- CACCAAGGUCUUUCUGAGUAGA -57
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