Mir-1247-v1

MirGeneDB ID

Eca-Mir-1247-v1

Family name

MIR-1247 (all species)

Seed

CCCGUCC

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-1247-v2

Orthologues

Bta-Mir-1247-v1 Cfa-Mir-1247 Cja-Mir-1247 Cpo-Mir-1247 Dno-Mir-1247 Ete-Mir-1247 Hsa-Mir-1247 Laf-Mir-1247 Mml-Mir-1247 Mmr-Mir-1247 Mmu-Mir-1247 Ocu-Mir-1247 Pab-Mir-1247 Rno-Mir-1247

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43798914-43798971 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGCACGGCGCGGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGCUGAGCCACCUUCGCCGACCCCG

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Structure

        10        20          30        40        50         
UCGCACGGCGCGGCCCCGGCC-  -|      A  C   C  U    C     ACGUUGC 
                      GC CGGGCGC CC GUC CG GCGU CCCGG       \
                      CG GCCCGCG GG CAG GC UGCA GGGCC       U
GCCCCAGCCGCUUCCACCGAGU  A^      A  U   A  -    A     CCGUCUC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-1247-v1_5p

mirBase accession

None

Sequence

0- ACCCGUCCCGUGCGUCCCCGGA -22

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Star sequence

Eca-Mir-1247-v1_3p*

mirBase accession

None

Sequence

37- CGGGAACGUCGAGACUGGAGC -58

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