MirGeneDB ID | Eca-Mir-1247-v2 |
Family name |
MIR-1247 (all species) |
Seed |
ACCCGUC |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
Eca-Mir-1247-v1
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Orthologues |
Bta-Mir-1247-v2
Cfa-Mir-1247
Cja-Mir-1247
Cpo-Mir-1247
Dno-Mir-1247
Ete-Mir-1247
Hsa-Mir-1247
Laf-Mir-1247
Mml-Mir-1247
Mmr-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Pab-Mir-1247
Rno-Mir-1247
|
Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009171.1: 43798913-43798972 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUCGCACGGCGCGGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGCUGAGCCACCUUCGCCGACCCCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCGCACGGCGCGGCCC----| CGC A C C U C ACGUUGC
CGGC CGGGCGC CC GUC CG GCGU CCCGG \
GUCG GCCCGCG GG CAG GC UGCA GGGCC U
AGCCCCAGCCGCUUCCACCGA^ A-- A U A - A CCGUCUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-1247-v2_5p |
mirBase accession | None |
Sequence |
0- CACCCGUCCCGUGCGUCCCCGGA -23
Get sequence
|
Star sequence |
Eca-Mir-1247-v2_3p* |
mirBase accession | None |
Sequence |
38- CGGGAACGUCGAGACUGGAGCG -60
Get sequence
|