| MirGeneDB ID | Bta-Mir-1247-v2 |
|---|---|
| Family name | MIR-1247 (all species) |
| Seed | ACCCGUC |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-1247 |
| Paralogues | Bta-Mir-1247-v1 |
| Orthologues | Cfa-Mir-1247 Cja-Mir-1247 Cpo-Mir-1247 Dno-Mir-1247 Eca-Mir-1247-v2 Ete-Mir-1247 Hsa-Mir-1247 Laf-Mir-1247 Mml-Mir-1247 Mmr-Mir-1247 Mmu-Mir-1247 Ocu-Mir-1247 Pab-Mir-1247 Rno-Mir-1247 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037348.1: 66493376-66493435 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-1247-v2) |
Mir-1247-v2
NC_037348.1: 66493376-66493435 [-]
UCSC
Ensembl
Mir-1247-v1 NC_037348.1: 66493377-66493434 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUCGGCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUCGCUGUCUGCCCCGGGAACGUCGGGACUGGAGCGCCCGCGCUGAGCCACCUUCACCGACCCAGAGet precursor sequence |
| Structure | 10 20 30 40 50 CUCGGCCGGCGCAGCCC----| C C A C U C ACGUCGC CGGC GC GGGCGC CC GUCCCG GCGU CCCGG \ GUCG CG CCCGCG GG CAGGGC UGCA GGGCC U AGACCCAGCCACUUCCACCGA^ - - A U - A CCGUCUG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Bta-Mir-1247-v2_5p |
| mirBase accession | MIMAT0025549 |
| Sequence |
0- CACCCGUCCCGUGCGUCCCCGGA -23
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-1247-5p |
| Star sequence | Bta-Mir-1247-v2_3p* |
| mirBase accession | MIMAT0025550 |
| Sequence |
38- CGGGAACGUCGGGACUGGAGCG -60
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-1247-3p |
