| MirGeneDB ID | Cja-Mir-1247 |
|---|---|
| Family name | MIR-1247 (all species) |
| Seed | CCCGUCC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1247-v1 Bta-Mir-1247-v2 Cfa-Mir-1247 Cpo-Mir-1247 Dno-Mir-1247 Eca-Mir-1247-v1 Eca-Mir-1247-v2 Ete-Mir-1247 Hsa-Mir-1247 Laf-Mir-1247 Mml-Mir-1247 Mmr-Mir-1247 Mmu-Mir-1247 Ocu-Mir-1247 Pab-Mir-1247 Rno-Mir-1247 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 132392983-132393040 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCGCCCAGCACAGCCCCGGCCGCCGGGCGCACCCGUCCCGUUCGUCCCCGGACGUUGUUCUGUACCCCGGGAACGUCGAGACUGGAGCGCCCGAACUGAGCCACCUUCGUGGACCCCGGet precursor sequence |
| Structure | 10 20 30 40 50 UCGCCCAGCACAGCCCCGGCCGC--| A C C UU C ACGUUGU CGGGCGC CC GUC CG CGU CCCGG \ GCCCGCG GG CAG GC GCA GGGCC U GCCCCAGGUGCUUCCACCGAGUCAA^ A U A U- A CCAUGUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-1247_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCCGUCCCGUUCGUCCCCGGA -22
Get sequence
|
| Star sequence | Cja-Mir-1247_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CGGGAACGUCGAGACUGGAGC -58
Get sequence
|
