| MirGeneDB ID | Cfa-Mir-1247 |
|---|
| Family name |
MIR-1247 (all species) |
|---|
| Seed |
CCCGUCC |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1247
Cpo-Mir-1247
Dno-Mir-1247
Ete-Mir-1247
Hsa-Mir-1247
Mml-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Rno-Mir-1247
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(canFam3_add) |
WIGL01005664.1: 610-667 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCGCCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGCUGAGCCACCUUCGCCGACCCCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGCCCGGCGCAGCCCCGGCC- -| A C C U C ACGUUGC
GC CGGGCGC CC GUC CG GCGU CCCGG \
CG GCCCGCG GG CAG GC UGCA GGGCC U
GCCCCAGCCGCUUCCACCGAGU A^ A U A - A CCGUCUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archives. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Mir-1247_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCGUCCCGUGCGUCCCCGGA -22
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Mir-1247_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CGGGAACGUCGAGACUGGAGC -58
Get sequence
|
|---|
