MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-1247

Family name MIR-1247 (all species)
Seed CCCGUCC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1247
Paralogues
Orthologues Bta-Mir-1247  Cfa-Mir-1247  Cpo-Mir-1247  Dno-Mir-1247  Ete-Mir-1247  Hsa-Mir-1247  Mml-Mir-1247  Mmu-Mir-1247  Ocu-Mir-1247 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr6: 134626107-134626164 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGCCCGGCGCAGUCCCGGCCGCCGGGCGCACCCGUCCCGUUCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAACUGAGCCACCUUCGCGAACCCGG
Get precursor sequence
Structure
        10        20          30        40        50         
UCGCCCGGCGCAGUCCCGGCCGC--|      A  C   C  UU   C     ACGUUGC 
                         CGGGCGC CC GUC CG  CGU CCCGG       \
                         GCCCGCG GG CAG GC  GCA GGGCC       U
GGCCCAAGCGCUUCCACCGAGUCAA^      A  U   A  U-   A     CCGUCUC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-1247_5p

mirBase accessionMIMAT0035721
Sequence
0- ACCCGUCCCGUUCGUCCCCGGA -22
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Proposed targets TargetScanVert: rno-miR-1247-5p
miRDB: MIMAT0035721
Star sequence

Rno-Mir-1247_3p*

mirBase accessionMIMAT0035722
Sequence
37- CGGGAACGUCGAGACUGGAGC -58
Get sequence
Proposed targets TargetScanVert: rno-miR-1247-3p
miRDB: MIMAT0035722