MirGeneDB ID | Laf-Mir-1247 |
---|---|
Family name | MIR-1247 (all species) |
Seed | CCCGUCC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-1247-v1 Bta-Mir-1247-v2 Cfa-Mir-1247 Cja-Mir-1247 Cpo-Mir-1247 Dno-Mir-1247 Eca-Mir-1247-v1 Eca-Mir-1247-v2 Ete-Mir-1247 Hsa-Mir-1247 Mml-Mir-1247 Mmr-Mir-1247 Mmu-Mir-1247 Ocu-Mir-1247 Pab-Mir-1247 Rno-Mir-1247 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 74837592-74837649 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCGCCCGGCGCAGCCCGGGCCGCUGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCCGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGUCGGGCCACCUUCGCCGACCCGGGet precursor sequence |
Structure | 10 20 30 40 50 UCGCCCGGCGCAGCCCGGG - -| A C C U C ACGUUGC CCG CU GGGCGC CC GUC CG GCGU CCCGG \ GGC GA CCCGCG GG CAG GC UGCA GGGCC U GGCCCAGCCGCUUCCACCG U G^ A U A - A CCGCCUC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Laf-Mir-1247_5p (predicted) |
mirBase accession | None |
Sequence |
0- ACCCGUCCCGUGCGUCCCCGGA -22
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|
Star sequence | Laf-Mir-1247_3p* (predicted) |
mirBase accession | None |
Sequence |
37- CGGGAACGUCGAGACUGGAGC -58
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