MirGeneDB ID | Ete-Mir-203-v1 |
Family name |
MIR-203 (all species) |
Seed |
UGAAAUG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-203-v2
|
Orthologues |
Aca-Mir-203-v1
Ami-Mir-203-v1
Bta-Mir-203-v1
Cfa-Mir-203-v1
Cja-Mir-203-v1
Cpi-Mir-203-v1
Cpo-Mir-203-v1
Dno-Mir-203-v1
Eca-Mir-203-v1
Gga-Mir-203-v1
Gja-Mir-203-v1
Hsa-Mir-203-v1
Lch-Mir-203
Loc-Mir-203-v1
Mdo-Mir-203-v1
Mml-Mir-203-v1
Mmr-Mir-203-v1
Mmu-Mir-203-v1
Mun-Mir-203-v1
Neu-Mir-203-v1
Oan-Mir-203-v1
Ocu-Mir-203-v1
Pab-Mir-203-v1
Pbv-Mir-203-v1
Rno-Mir-203-v1
Sha-Mir-203-v1
Spt-Mir-203
Sto-Mir-203-v1
Tgu-Mir-203-v1
Xtr-Mir-203-v1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980297: 87551220-87551279 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GAGGGACGCCCGGACUCGCGCGCUGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCUGGCGACACCGGCGGAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGGGACGCCCGGACUC--| G C U G A UUCUGU
GC CGCUGGGUC AGUGGUUCU AACA UUCA CAG \
CG GCGGCCCAG UCACCAGGA UUGU AAGU GUU A
CGAGGCGGCCACAGCGGUC^ G A U A - AACGCG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-203-v1_5p* |
mirBase accession | None |
Sequence |
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
|
Mature sequence |
Ete-Mir-203-v1_3p |
mirBase accession | None |
Sequence |
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence
|