MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-203-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-203
Paralogues Ami-Mir-203-v2 
Orthologues Aca-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cja-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714221.1: 9204428-9204487 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-203-v1)		 Mir-203-v2 NW_017714221.1: 9204427-9204487 [-] UCSC
Mir-203-v1 NW_017714221.1: 9204428-9204487 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGAGCGGGCGCUCUCCGCCUCGCGGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUUUAGGCUAAUUGUGAAAUGUUUAGGACCACUUGACCCGCGAGGCGCCGCCGGCGGAUGCCCCG
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Structure
        10          20        30        40        50          
AGGAGCGGGCGCUCUCC--|          GC         U    G    A   UUCUUU 
                   GCCUCGCGGGU  AGUGGUUCU AACA UUCA CAG      \
                   CGGAGCGCCCA  UCACCAGGA UUGU AAGU GUU      A
GCCCCGUAGGCGGCCGCCG^          GU         U    A    -   AAUCGG 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-203-v1_5p*
mirBase accessionMIMAT0038223
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
Mature sequence

Ami-Mir-203-v1_3p
mirBase accessionMIMAT0038224
Sequence 
38- GUGAAAUGUUUAGGACCACUUG -60
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