MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-203-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-203
Paralogues Ami-Mir-203-v1 
Orthologues Aca-Mir-203-v2  Bta-Mir-203-v2  Cfa-Mir-203-v2  Cja-Mir-203-v2  Cpi-Mir-203-v2  Cpo-Mir-203-v2  Dno-Mir-203-v2  Eca-Mir-203-v2  Ete-Mir-203-v2  Gga-Mir-203-v2  Gja-Mir-203-v2  Hsa-Mir-203-v2  Lch-Mir-203  Loc-Mir-203-v2  Mdo-Mir-203-v2  Mml-Mir-203-v2  Mmr-Mir-203-v2  Mmu-Mir-203-v2  Mun-Mir-203-v2  Neu-Mir-203-v2  Oan-Mir-203-v2  Ocu-Mir-203-v2  Pab-Mir-203-v2  Pbv-Mir-203-v2  Rno-Mir-203-v2  Sha-Mir-203-v2  Spt-Mir-203  Sto-Mir-203-v2  Tgu-Mir-203-v2  Xtr-Mir-203-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714221.1: 9204427-9204487 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-203-v2)		 Mir-203-v2 NW_017714221.1: 9204427-9204487 [-] UCSC
Mir-203-v1 NW_017714221.1: 9204428-9204487 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGAGCGGGCGCUCUCCGCCUCGCGGGUGCAGUGGUUCUUAACAGUUCAACAGUUCUUUAGGCUAAUUGUGAAAUGUUUAGGACCACUUGACCCGCGAGGCGCCGCCGGCGGAUGCCCCGG
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Structure
        10           20        30        40        50          
AGGAGCGGGCGCUCUCC---|          GC         U    G    A  GUUCUUU 
                    GCCUCGCGGGU  AGUGGUUCU AACA UUCA CA       \
                    CGGAGCGCCCA  UCACCAGGA UUGU AAGU GU       A
GGCCCCGUAGGCGGCCGCCG^          GU         U    A    -  UAAUCGG 
 .       110       100        90        80        70
Deep sequencing
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CommentUnlike most other vertebrates this appears to be a separate DICER cut in addition to a 3' monouridylation.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-203-v2_5p*
mirBase accessionMIMAT0038223
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
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Mature sequence

Ami-Mir-203-v2_3p
mirBase accessionMIMAT0038224
Sequence 
39- UGAAAUGUUUAGGACCACUUGA -61
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