MirGeneDB ID | Eca-Mir-203-v2 |
Family name |
MIR-203 (all species) |
Seed |
GAAAUGU |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
Eca-Mir-203-v1
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Orthologues |
Aca-Mir-203-v2
Ami-Mir-203-v2
Bta-Mir-203-v2
Cfa-Mir-203-v2
Cja-Mir-203-v2
Cpi-Mir-203-v2
Cpo-Mir-203-v2
Dno-Mir-203-v2
Ete-Mir-203-v2
Gga-Mir-203-v2
Gja-Mir-203-v2
Hsa-Mir-203-v2
Lch-Mir-203
Loc-Mir-203-v2
Mdo-Mir-203-v2
Mml-Mir-203-v2
Mmr-Mir-203-v2
Mmu-Mir-203-v2
Mun-Mir-203-v2
Neu-Mir-203-v2
Oan-Mir-203-v2
Ocu-Mir-203-v2
Pab-Mir-203-v2
Pbv-Mir-203-v2
Rno-Mir-203-v2
Sha-Mir-203-v2
Spt-Mir-203
Sto-Mir-203-v2
Tgu-Mir-203-v2
Xtr-Mir-203-v2
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Node of Origin (locus) |
Vertebrata
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Node of Origin (family) |
Vertebrata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009171.1: 45947387-45947446 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGCGGCGGAGCGCGGACGCGCGCCGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCUGGCUGCGGCGGCGACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCGGCGGAGCGCGGAC--| G C U G A GUUCUGU
GC CGCCGGGUC AGUGGUUCU AACA UUCA CA \
CG GCGGCCCAG UCACCAGGA UUGU AAGU GU A
GACAGCGGCGGCGUCGGUC^ G A U A - UAACGCG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-203-v2_5p* |
mirBase accession | None |
Sequence |
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
|
Mature sequence |
Eca-Mir-203-v2_3p |
mirBase accession | None |
Sequence |
39- UGAAAUGUUUAGGACCACUAG -60
Get sequence
|