MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-203-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-203-v1 
Orthologues Aca-Mir-203-v2  Ami-Mir-203-v2  Bta-Mir-203-v2  Cfa-Mir-203-v2  Cpi-Mir-203-v2  Cpo-Mir-203-v2  Dno-Mir-203-v2  Eca-Mir-203-v2  Ete-Mir-203-v2  Gga-Mir-203-v2  Gja-Mir-203-v2  Hsa-Mir-203-v2  Lch-Mir-203  Loc-Mir-203-v2  Mdo-Mir-203-v2  Mml-Mir-203-v2  Mmr-Mir-203-v2  Mmu-Mir-203-v2  Mun-Mir-203-v2  Neu-Mir-203-v2  Oan-Mir-203-v2  Ocu-Mir-203-v2  Pab-Mir-203-v2  Pbv-Mir-203-v2  Rno-Mir-203-v2  Sha-Mir-203-v2  Spt-Mir-203  Sto-Mir-203-v2  Tgu-Mir-203-v2  Xtr-Mir-203-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021924.1: 134858047-134858106 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACGGUGUCGCGGACUCGCGCGCUGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUGGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCCGGCGACGGCGACAGCGA
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Structure
        10          20        30        40        50         
GACGGUGUCGCGGACUC--| G         C         U    G    ACAGUUCUG 
                   GC CGCUGGGUC AGUGGUUCU AACA UUCA         U
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU         G
AGCGACAGCGGCAGCGGCC^ G         A         U    A    GUUAACGCG 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-203-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUGGUUCUUAACAGUUCAAC -21
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Mature sequence

Cja-Mir-203-v2_3p (predicted)

mirBase accessionNone
Sequence
39- UGAAAUGUUUAGGACCACUAG -60
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