MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-203-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-203-v2 
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Eca-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mmr-Mir-203-v1  Mmu-Mir-203-v1  Mun-Mir-203-v1  Neu-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pab-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 134858047-134858106 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACGGUGUCGCGGACUCGCGCGCUGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUGGCGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGGGCCCGGCGACGGCGACAGCGA
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Structure
        10          20        30        40        50          
GACGGUGUCGCGGACUC--| G         C         U    G    A   UUCUGU 
                   GC CGCUGGGUC AGUGGUUCU AACA UUCA CAG      \
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU GUU      G
AGCGACAGCGGCAGCGGCC^ G         A         U    A    -   AACGCG 
.       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Cja-Mir-203-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGGUUCUUAACAGUUCAACAG -23
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Mature sequence

Cja-Mir-203-v1_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGAAAUGUUUAGGACCACUAG -60
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